Class PhysicalLocationShort
java.lang.Object
picard.sam.util.PhysicalLocationInt
picard.sam.util.PhysicalLocationShort
- All Implemented Interfaces:
Serializable, PhysicalLocation
Small class that provides access to the physical location information about a cluster.
All values should be defaulted to -1 if unavailable. Tile should only allow
non-zero positive integers, x and y coordinates must be non-negative.
This is different from PhysicalLocationInt in that the x and y positions are shorts, not ints
thus, they may overflow within a HiSeqX tile.
- See Also:
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Field Summary
Fields inherited from class PhysicalLocationInt
tile, x, yFields inherited from interface PhysicalLocation
NO_VALUE -
Constructor Summary
Constructors -
Method Summary
Methods inherited from class PhysicalLocationInt
getLibraryId, getReadGroup, getTile, getX, getY, setLibraryId, setReadGroup, setTileMethods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface PhysicalLocation
hasLocation
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Constructor Details
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PhysicalLocationShort
public PhysicalLocationShort()
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Method Details
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setX
public void setX(int x) - Specified by:
setXin interfacePhysicalLocation- Overrides:
setXin classPhysicalLocationInt
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setY
public void setY(int y) - Specified by:
setYin interfacePhysicalLocation- Overrides:
setYin classPhysicalLocationInt
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