CodonState (JEBL2 lib API)

java.lang.Object

jebl.evolution.sequences.State

jebl.evolution.sequences.CodonState

All Implemented Interfaces:: Comparable

public final class CodonState extends State

As of 2007-07-30, instances of this class are only constructed for non-ambigous nucleotide triplets - see Codons.

Version:: $Id: CodonState.java 810 2007-10-12 00:40:45Z twobeers $
Author:: Andrew Rambaut, Alexei Drummond

Method Summary

Modifier and Type

Method

Description

SequenceType

getType()

boolean

isGap()

Methods inherited from class State
compareTo, fractionEqual, getCanonicalStates, getCode, getFullName, getIndex, getName, isAmbiguous, possiblyEqual, toString

Methods inherited from class Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Details
- isGap
  
  public boolean isGap()
  
  Specified by:
  
  isGap in class State
- getType
  
  public SequenceType getType()
  
  Specified by:
  
  getType in class State